| HLA-DRB1*0401 (DR4Dw4) | | go to top |
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| Position | Source of peptides | Reference | Remark |
|---|
| 1 2 3 4 5 6 7 8 9 |
| anchors or auxiliary anchors |
| F P N D D | | Friede et al. 1996, Sette et al. 1993/1, Hammer et al. 1993, Hammer et al. 1995 | |
| Y W S E E | | | |
| W I T H H | | | |
| I L Q K K | | | |
| L V H N N | | | |
| V A R Q Q | | | |
| M D R R | | | |
| E S S | | | |
| T T | | | |
| Y Y | | | |
| A A | | | |
| C C | | | |
| I I | | | |
| L L | | | |
| M M | | | |
| V V | | | |
| Example for Ligand |
| R A S W R I I S S I E Q K E E | 14-3-3 protein epsilon 57-71 | Dengjel et al. 2005/2 | |
| S G T Q F V C E T V I R S L T L D | 1A1-3B 644-657 | Dengjel et al. 2005/2 | |
| A I P F V I E K A V R S S I Y G | 2-hydroxyphytanoyl-CoA lyase 146-161 | Dengjel et al. 2005/2 | |
| L K P A F K K D G S T T A G N | 3-oxoacyl-CoA thiolase 260-274 | Dengjel et al. 2005/2 | |
| A D R D T Y R R S A V P P G A D | 40S ribosomal protein S10 122-137 | Dengjel et al. 2005/2 | |
| L P P N W K Y E S S T A S A | 40S ribosomal protein S13 134-147 | Dengjel et al. 2005/2 | |
| L V E F A R N L T A L G L N L V | 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase 17-32 | Dengjel et al. 2005/2 | |
| N P L H F H L I A D S I A E Q I L | Acetylglucosaminyltransferase-like protein 166-182 | Dengjel et al. 2005/2 | |
| W I S K Q E D E S G P S I V H R | Actin 356-372 | Fissolo et al. 2009 | |
| A P V P A F E G R S F L A F P T L R A Y H T L | Agrin 1343-1365 | Dengjel et al. 2005/2 | |
| D T G S Y R A Q I S T K T S A K | Aktivating NK receptor 82-97 | Dengjel et al. 2005/2 | |
| A P G K G I L A A D E S T G S I A | Aldolase A 24-40 | Dengjel et al. 2005/2 | |
| L P P D V E F N R P F L | Alpha1-Antitrypsin (bovine) 358-369 | Muntasell et al. 2004 | |
| Y D R N T K S P L F V G K V V N P T Q A | Alpha1-Antitrypsin (bovine) 373-392 | Muntasell et al. 2002 | |
| A A H L P A E F T P A V H A S L D K F | Alpha-2 globin 111-129 | Fissolo et al. 2009 | |
| I K E K Y G K D A T N V G D E G G | Alpha enolase 195-211 | Muntasell et al. 2002 | |
| V I K E K Y G K D A T N V G D E G G | Alpha enolase 194-211 | Dengjel et al. 2005/2 | |
| G V P L Y R H I A D L A G N S E V I | Alpha enolase 126-143 | Dengjel et al. 2005/2 | |
| D V P K W I S I M T E R S V P H L Q | Annexin A2 208-225 | Dengjel et al. 2005/2 | |
| D V P K W I S I M T E R S V P H L | Annexin II 208-224 | Halder et al. 1997 | |
| S A S Y K A D T V A K V Q G T E | Apolipoprotein B-100 precursor 1821-1834 | Dengjel et al. 2005/2 | |
| N Q E L L R A D G T V N Q I E G | Apolipoprotein D 58-72 | Fissolo et al. 2009 | |
| Q E L R A D G T V N Q I E G E | Apolipoprotein D 59-73 | Muntasell et al. 2002 | |
| L N Q E L R A D G T V N Q | Apolipoprotein D 57-69 | Muntasell et al. 2002 | |
| V L N Q E L R A D G T V N Q I E G | Apolipoprotein D 56-72 | Muntasell et al. 2004 | |
| V L N Q E L R A D G T V N Q I E G E | Apolipoprotein D 56-73 | Muntasell et al. 2004 | |
| Q E L R A D G T V N Q I E G | Apolipoprotein D 59-72 | Dengjel et al. 2005/2 | |
| F E L F P S L S H N L L V D | Aspartyl Aminopeptidase 462-475 | Dengjel et al. 2005/2 | |
| Y P E E A Y I A D L D A K S G A S | ATP-citrate lyase 247-263 | Dengjel et al. 2005/2 | |
| Y V D D T Q F V R F D S D S A C P R M E P R A P | b2 microglobulin (HLA-G) 27-50 | Dengjel et al. 2005/2 | |
| F Y L L Y Y T E F T P T E K D E Y A | beta-2 microglobulin 62-79 | Dengjel et al. 2005/2 | |
| Y T E F T P T E K D E Y | beta-2 microglobulin 67-78 | Dengjel et al. 2005/2 | |
| L L Y Y T E F T P T E K | beta-2 microglobulin 64-75 | Dengjel et al. 2005/2 | |
| Y Q K V V A G V A N A L A H K Y H | beta globin 131-147 | Fissolo et al. 2009 | |
| A K F W E V I S D E H G I D P T | Beta tubulin 18-33 | Dengjel et al. 2005/2 | |
| E P Y N A T L S V V H Q L V E | Beta tubulin 181-194 | Dengjel et al. 2005/2 | |
| I S R A Q F V P L P V S V S V E | Bovine fetuin 176-182 | Dengjel et al. 2005/2 | |
| F V K D Q T V Y Q N T D G N | Bovine serotransferrin precursor (BSP) 539-552 | Muntasell et al. 2002 | |
| K G D V A F V K D Q T V Y Q N T D G N | Bovine serotransferrin precursor (BSP) 534-552 | Muntasell et al. 2004 | |
| F V K D Q T V I Q N T D | Bovine serotransferrin precursor (BSP) 539-550 | Lippolis et al. 2002, Dengjel et al. 2005/2 | |
| D V A F V K D Q T V I Q | Bovine serotransferrin precursor (BSP) 536-547 | Lippolis et al. 2002, Dengjel et al. 2005/2 | |
| G D V A F V K D Q T V I Q N T D G N N | Bovine serotransferrin precursor (BSP) 535-553 | Lippolis et al. 2002, Dengjel et al. 2005/2 | |
| S P D L P K L K P D P N T L C D E F | Bovine serum albumin 109-126 | Dengjel et al. 2005/2 | |
| L V S P T P V L Q | Calcitonin receptor 1b (mouse) 16-24 | Muntasell et al. 2002 | |
| N P P L F A L D K D A P L R Y | Calsyntenin 28-42 | Dengjel et al. 2005/2 | |
| E I H V V H L S T A F A R V D E A L G R | Carbonic anhydrase IX 212-231 | Vissers et al. 2002 | |
| V P G T Y K I T A S A R G Y N | Carboxypeptidase D 805-819 | Dengjel et al. 2005/2 | |
| V P G T Y K I T A S A R G Y N P V | Carboxypeptidase D 805-821 | Dengjel et al. 2005/2 | |
| V P G T Y K I T A S A R G Y N P V T | Carboxypeptidase D (rat) 799-816 | Muntasell et al. 2002 | |
| E P G E P E F K Y I G N M H G N E | Carboxypeptidase E 76-92 | Fissolo et al. 2009 | |
| G E P E F K Y I G N M H G N E A | Carboxypeptidase H (rat) 76-91 | Muntasell et al. 2002 | |
| E P G E P E F K Y I G N M H G N E A | Carboxypeptidase H (rat) 74-91 | Muntasell et al. 2002 | |
| L P G L A K Q P S F R Q Y S G | Cathepsin A 10-24 | Dengjel et al. 2005/2 | |
| K K V V V Y L Q K L D T A Y D D L G | Cathepsin C 62-79 | Dengjel et al. 2005/2 | |
| K Y D H N F V K A I N A I Q K S W T | Cathepsin C 145-162 | Friede et al. 1996, Dengjel et al. 2005/2 | |
| S G M D Y W I V K N S W G T G W G | Cathepsin C 418-434 | Dengjel et al. 2005/2 | |
| I F S F Y L S R D P D A Q P G | Cathepsin D 164-178 | Dengjel et al. 2005/2 | |
| L S R D P D A Q P G G E | Cathepsin D 169-180 | Dengjel et al. 2005/2 | |
| K N L K F V M L H N L E H S M | Cathepsin S 38-52 | Dengjel et al. 2005/2 | |
| T T A F Q Y I I D N K G I D S D | Cathepsin S 170-185 | Dengjel et al. 2005/2 | |
| G K E Y W L V K N S W G H N | Cathepsin S 274-287 | Dengjel et al. 2005/2 | |
| G T E Y W I V R N S W G E P W | Cathepsin Z 192-206 | Dengjel et al. 2005/2 | |
| S G P K P L F R R M S S L V G P T Q S F | CD20 25-44 | Dengjel et al. 2005/2 | |
| S P G E P Q I I F C R S E A A H Q G V I | CD45 366-385 | Dengjel et al. 2005/2 | |
| I H R Y H S D N S T K A A W D | CD53 122-136 | Dengjel et al. 2005/1 | |
| I H R Y H S D N S T K A A W D | CD53 122-136 (Glyc-N 129) | Dengjel et al. 2005/2 | |
| S I H R Y H S D N S T K A A W D | CD53 121-136 | Dengjel et al. 2005/1 | |
| S I H R Y H S D N S T K A A W D | CD53 121-136 (Glyc-N 129) | Dengjel et al. 2005/2 | |
| A T P L L M Q A L P M G A L P Q G P | CD74 (invariant chain) 110-127 | Dengjel et al. 2005/2 | |
| M H H W L L F E M S R H S L E | CD74 (invariant chain) 185-199 | Dengjel et al. 2005/2 | |
| V A T Q Y F A D R D M F C A G R V P | Chaperonin containing TCP1, subunit 7 298-315 | Dengjel et al. 2005/2 | |
| S L M V T N D G A T I L K N | Chaperonin con. TCP1, subunit 2 (beta) 59-72 | Dengjel et al. 2005/2 | |
| I A Y D V T Y S K A C V R | Chemokine (C-C motif) receptor 7 282-294 | Dengjel et al. 2005/2 | |
| N I A Y D V T Y S L A C V R | Chemokine (C-C motif) receptor 7 281-294 | Dengjel et al. 2005/2 | |
| T E E F E V T K T A V A H R P G | Chromosome 19 open reading frame 10 138-153 | Dengjel et al. 2005/2 | |
| I P W F V S D T T I H D F N | Chromosome 6 open reading frame 211 285-298 | Dengjel et al. 2005/2 | |
| V G V P Y R I T V T A V S A S G | class I cytokine receptor 353-368 | Dengjel et al. 2005/2 | |
| L E K I V L D N S V F S E H R N | Clathrin heavy chain 2 1008-1023 | Dengjel et al. 2005/2 | |
| I G Q R R F N L Q K N F V G K V A L | COCH-5B2 152-169 | Dengjel et al. 2005/2 | |
| V A R F A A A A T Q Q Q T A | Copine III 404-417 | Dengjel et al. 2005/2 | |
| N P P S M V A A G S V V A A V | Cyclin D1 198-212 | Dengjel et al. 2004 | |
| G R D L T D Y L M K I L T E R G Y S F T | Cytoskeletal gamma-actin gene 181-200 | Dengjel et al. 2005/2 | |
| W I S K Q E Y D E S G P S I V H R K C F | Cytoskeletal gamma-actin gene 355-374 | Dengjel et al. 2005/2 | |
| G Y L P N Q L F R T F | DEAD box protein 1 730-740 | Dengjel et al. 2005/2 | |
| L P K Y I L D F S L | Dermatan 4-sulfotransferase 1 352-361 | Dengjel et al. 2005/2 | |
| D V L P K Y I L D F S L | Dermatan 4-sulfotransferase 1 350-361 | Dengjel et al. 2005/2 | |
| L P F G A Q S T Q R G H T E | Dipeptidyl peptidase 7 89-102 | Dengjel et al. 2005/2 | |
| E P R R Y G S A A A L P S | DNA binding protein (SMBP2) 68-80 | Dengjel et al. 2005/2 | |
| N V W Q V N T S R T R I T F V | DNA replication licensing factor MCM7 705-719 | Muntasell et al. 2004 | |
| C V N V V G T Q N A H N L I T V S T D G | Dynein, cytoplasmic, intermediate chain (rat) 392-411 | Muntasell et al. 2004 | |
| M E K Y N I E K D I A A Y I K | Dynein, cytoplasmic, light chain 2 29-43 | Dengjel et al. 2005/2 | |
| D I D A I F K D L S I R S V R | eIF-4H 56-70 | Dengjel et al. 2005/2 | |
| I E K F E K E A A E M G K G | Elongation factor 1 alpha 38-52 | Muntasell et al. 2002 | |
| I E K F E K E A A E M G K G | Elongation factor 1 alpha 39-52 | Dengjel et al. 2005/2 | |
| T I E K F E K E A A E M G K G S F | Elongation factor 1 alpha 38-54 | Dengjel et al. 2005/2 | |
| S K Y Y V T I I D A P G H R D | Elongation factor 1 alpha 83-97 | Dengjel et al. 2005/2 | |
| G F G D L K T P A G L Q V L N D | Elongation factor 1 beta homolog (mouse) 1-16 | Muntasell et al. 2004 | |
| K N K D Y Y I I S T S N G S L E G | Ephrin B2 (mouse) 103-119 | Muntasell et al. 2002 | |
| N P T T Y Q M D V N P E G K Y S | Epidermal growth factor receptor (mouse) 247-262 | Muntasell et al. 2002 | |
| Y N P T T Y Q M D V N P E G K Y S | Epidermal growth factor receptor (mouse) 246-262 | Muntasell et al. 2002 | |
| L Y N P T T Y Q M D V N P E G K Y S | Epidermal growth factor receptor (mouse) 245-262 | Muntasell et al. 2004 | |
| D E F K K F I S D K D A S V V G | ER-60 Protease (rat) 136-154 | Muntasell et al. 2004 | |
| T E D E F K K F I S D K D A S V V G | ER-60 Protease (rat) 137-154 | Muntasell et al. 2002 | |
| S A M T E E A A V A I K A M A K | Eukaryotic translation initiation factor 5A 138-153 | Muntasell et al. 2004 | |
| L S P S E L D K D P T Y A I I T | Fat 1 cadherin (mouse) 263-278 | Muntasell et al. 2004 | |
| S S A T V Y N I D A S S E S P D H | Fatty acid synthase (rat) 857-873 | Muntasell et al. 2002 | |
| V A Q A S L G E Y L F E R L T L K H D | Ferritin, light chain (rat) 164-182 | Muntasell et al. 2002 | |
| G V A Q A S L G E Y L F E R L T L K H D | Ferritin, light chain (rat) 163-182 | Muntasell et al. 2002 | |
| I S R A Q F V P L P V S V S V E | Fetuin (cattle) 167-182 | Muntasell et al. 2004 | |
| D L R H T F S G V A S V E S S S G E | Fetuin (cattle) 292-309 | Muntasell et al. 2002 | |
| D L R H T F S G V A S V E S S S G E A | Fetuin (cattle) 292-310 | Muntasell et al. 2004 | |
| S G E A F H V G K T P I V G Q P S | Fetuin (cattle) 307-323 | Muntasell et al. 2004 | |
| V G K T P I V G Q P S I P G G P V R | Fetuin (cattle) 313-330 | Muntasell et al. 2004 | |
| G K T P I V G Q P S I P G G P V R | Fetuin (cattle) 314-330 | Muntasell et al. 2004 | |
| L P S E K A I F L F V D K T V P Q S S | GABA-A receptor-associated protein like 2 70-88 | Dengjel et al. 2005/2 | |
| A I F L F V D K T V P Q S S L T | GABA-A receptor-associated protein like 2 75-90 | Dengjel et al. 2005/2 | |
| Y D N E F G Y S N R V V D L | GAPDH 314-327 | Fissolo et al. 2009 | |
| A A Q N I I P A S T G A A K | GAPDH (rat) 199-213 | Muntasell et al. 2004 | |
| I S W Y D N E Y G Y S N R V V D L | GAPDH (rat) 308-324 | Muntasell et al. 2002 | |
| E P I E Q K F V S I S D L L V P K | GDP dissociation inhibitor beta 374-390 | Dengjel et al. 2005/2 | |
| V P M Y I G E I S P T A L R | Glucose transporter 14 short form (SCL2A14) 162-175 | Dengjel et al. 2005/2 | |
| L A K W V A I Q S V S A W P E | Glutamate carboxypeptidase 22-36 | Dengjel et al. 2005/2 | |
| P Y L I D G S H K V T Q S | Glutathione S-transferase Yb4 (rat) 61-73 | Muntasell et al. 2004 | |
| L Q N I I P A S T G A A K A V G | Glyceraldehyde-3-phosphate dehydrogenase 202-217 | Dengjel et al. 2005/2 | |
| S L Q E Y L A E Q N Q R Q L E | Glycoprotein 1 (rat) 124-138 | Muntasell et al. 2004 | |
| S L Q E Y L A E Q N Q R Q L E S | Glycoprotein 1 (rat) 124-139 | Muntasell et al. 2004 | |
| V T R A F V A A R T F A Q G L | Glypican-4 193-207 | Dengjel et al. 2005/2 | |
| T T G N Y R I E S V L S S S G K R | G-M2 activator protein 133-149 | Dengjel et al. 2005/2 | |
| R L G C I K I A A S L K G I | G-M2 activator protein 149-162 | Dengjel et al. 2005/2 | |
| L G K W C S E K T E T G Q E | Golgi apparatus protein 1 643-656 | Dengjel et al. 2005/2 | |
| D P E L D Y T L M R V C K Q M I K | Golgi apparatus protein 1 872-889 | Dengjel et al. 2005/2 | |
| K V N L L K I K T E L C K K E V | Golgi apparatus protein 1 1035-1050 | Dengjel et al. 2005/2 | |
| W N R Q L Y P E W T E A Q R L D | gp100 20-35 | Halder et al. 1997 | |
| A R K L I G D P N L E F | GTPase (rat) 164-175 | Muntasell et al. 2004 | |
| L N I F E T I V N N R V F S | Guanine nucleotide binding protein alpha 13 269-282 | Dengjel et al. 2005/2 | |
| V M R I I N E P T A A A I A Y G | Heat shock 70kDa protein 5 177-192 | Dengjel et al. 2005/2 | |
| V P T K K S Q I F S T A S D N Q P T V T | Heat shock 70kDa protein 5 425-444 | Dengjel et al. 2005/2 | |
| N V L R I I N E P T A A A I A Y G | Heat shock 70kDa protein 6 (HSP70B') 171-186 | Dengjel et al. 2005/2 | |
| G E R A M T K D N N L L G R F E | Heat shock 70kDa protein 6 (HSP70B') 447-462 | Dengjel et al. 2005/2 | |
| G N G G A A T T A E E N G S M M R | HemC (rat) 3-19 | Muntasell et al. 2004 | |
| A E A L E R M F L S F P T T K T | Hemoglobin alpha 26-41 | Chicz et al. 1993 | |
| V L S P A D K T N V K | Hemoglobin alpha 2 2-12 | Fissolo et al. 2009 | |
| D I F E R I A S E A S R L A | Histone H2B.c 68-81 | Dengjel et al. 2005/2 | |
| V N D I F E R I A S E A S R L A H Y N | Histone H2B.c 66-84 | Dengjel et al. 2005/2 | |
| V G Y V D D T Q F V R F D S D A A S Q R M E P R A P W I E | HLA-A*0201 51-77 | Lippolis et al. 2002 | |
| F V R F D S D A A S Q R M E | HLA-A*0201 57-70 | Lippolis et al. 2002 | |
| R F D S D A A S Q R | HLA-A*0201 59-68 | Lippolis et al. 2002 | |
| T T K H K W E A A H V A E Q L R | HLA-A*0201 142-157 | Dengjel et al. 2005/2 | |
| D T E F V R F D S D A A S Q R M E | HLA-A*0201 54-70 | Dengjel et al. 2005/2 | |
| D T E F V R F D S D A A S Q R M E P | HLA-A*0201 54-71 | Dengjel et al. 2005/2 | |
| D L S S W T A A D T A A Q I T Q | HLA-B*1501 129-144 | Lippolis et al. 2002 | |
| D L S S W T A A D T A A Q I T Q R | HLA-B*1501 129-145 | Lippolis et al. 2002 | |
| E D L S S W T A A D T A A Q I T Q R | HLA-B*1501 128-145 | Lippolis et al. 2002 | |
| L S S W T A A D T A A Q I T | HLA-B*1501 130-143 | Lippolis et al. 2002 | |
| L S S W T A A D T A A Q I T Q R | HLA-B*1501 130-145 | Lippolis et al. 2002 | |
| E D L S S W T A A D T A A Q I T Q | HLA-B*1501 128-144 | Lippolis et al. 2002 | |
| D L S S W T A A D T A A Q I T Q R K | HLA-B*1501 129-146 | Lippolis et al. 2002 | |
| D L S S W T A A D T A A Q I T | HLA-B*1501 129-143 | Lippolis et al. 2002 | |
| E D L S S W T A A D T A A Q I T Q R K | HLA-B*1501 128-146 | Lippolis et al. 2002 | |
| N E D L S S W T A A D T A A Q I T Q | HLA-B*1501 127-144 | Lippolis et al. 2002 | |
| E D L S S W T A A D T A A Q I T | HLA-B*1501 128-143 | Lippolis et al. 2002 | |
| S S W T A A D T A A Q I T Q | HLA-B*1501 131-144 | Lippolis et al. 2002 | |
| L N E D L S S W T A A D T A A Q I T Q | HLA-B*1501 126-144 | Lippolis et al. 2002 | |
| E D L S S W T A A D T A A Q | HLA-B*1501 128-141 | Lippolis et al. 2002 | |
| D L S S W T A A D T A A Q | HLA-B*1501 129-141 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R M A P R | HLA-B*1501 28-48 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R M A | HLA-B*1501 28-46 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R M A P | HLA-B*1501 28-47 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R | HLA-B*1501 28-44 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R | HLA-B*1501 30-44 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R M | HLA-B*1501 28-45 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R M A P R | HLA-B*1501 30-48 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R M | HLA-B*1501 30-45 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R M A P | HLA-B*1501 30-47 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R | HLA-B*1501 29-44 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P | HLA-B*1501 28-43 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P | HLA-B*1501 30-43 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R M A P R | HLA-B*1501 29-48 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R M A | HLA-B*1501 30-46 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R M | HLA-B*1501 29-45 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R M A P | HLA-B*1501 29-47 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R M A | HLA-B*1501 29-46 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P | HLA-B*1501 29-43 | Lippolis et al. 2002 | |
| T Q F V R F D S D A A S P R | HLA-B*1501 31-44 | Lippolis et al. 2002 | |
| F V R F D S D A A S P R | HLA-B*1501 33-44 | Lippolis et al. 2002 | |
| Y V D D T Q F V R F D S D A A S P R | HLA-B*1501 27-44 | Lippolis et al. 2002 | |
| F V R F D S D A A S P | HLA-B*1501 33-43 | Lippolis et al. 2002 | |
| V R F D S D A A S P R | HLA-B*1501 34-44 | Lippolis et al. 2002 | |
| Q F V R F D S D A A S P R | HLA-B*1501 32-44 | Lippolis et al. 2002 | |
| L S S W T A A D T A A Q I T Q | HLA-B*1504 130-144 | Friede et al. 1996 | |
| L S S W T A A D T A A Q I T | HLA-B*1504 130-143 | Friede et al. 1996 | |
| D L S S W T A A D T A A Q I T Q R K W E A A | HLA-B*1504 129-150 | Chicz et al. 1993 | |
| L S S W T A A D T A A Q I T Q | HLA-B*1504 130-144 | Adibzadeh et al. 1994 | |
| V D D T Q F V R F D S D A A S P R T E P R | HLA-B35 26-46 | Muntasell et al. 2002 | |
| D T Q F V R F D S D A A S P R T E P | HLA-B35 28-45 | Muntasell et al. 2002 | |
| V D D T Q F V R F D S D A A S P R T E P | HLA-B35 26-45 | Muntasell et al. 2002 | |
| D D T Q F V R F D S D A A S P R | HLA-B35 27-42 | Muntasell et al. 2002 | |
| D G K D Y I A L N E D L S S | HLA-B44 119-132 | Friede et al. 1996 | |
| V D D T L F V R F D S D A T S P R K E P R A P | HLA-B*4402 28-50 | Dengjel et al. 2005/2 | |
| L N E D L S S W T A A D T A A Q I T Q R K W E A A R V A | HLA-B*4402 126-153 | Dengjel et al. 2005/2 | |
| K D Y I A L N E D L S S W T A | HLA-B*4402 145-159 | Dengjel et al. 2005/2 | |
| G P E Y W D R E T Q I S K T N | HLA-B*4402 80-94 | Dengjel et al. 2005/2 | |
| L R W E P S S Q S T V P I V G I V A G | HLA-B*4402 296-314 | Dengjel et al. 2005/2 | |
| V D D T Q F V R F D S D A A S P R G E P | HLA-C 28-49 | Friede et al. 1996 | |
| L P K P P K P V S K M R M A T P L L M Q A L P M | HLA class II gamma chain 97-120 | Muntasell et al. 2004 | |
| K P P K P V S K M R M A T P L L M Q A L P | HLA class II gamma chain 99-119 | Muntasell et al. 2004 | |
| E D L R S W T A A D T A A Q I T Q | HLA-Cw*03 128-144 | Muntasell et al. 2002 | |
| D L R S W T A A D T A A Q I T Q | HLA-Cw*03 129-144 | Muntasell et al. 2002 | |
| V D D T Q F V R F D S D A A S P R G E P R | HLA-Cw*03 28-48 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R | HLA-Cw*03 28-44 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R | HLA-Cw*03 30-44 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R G E P R | HLA-Cw*03 30-48 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R G E P R | HLA-Cw*03 29-48 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R | HLA-Cw*03 29-44 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P | HLA-Cw*03 28-43 | Lippolis et al. 2002 | |
| V D D T Q F V R F D S D A A S P R G E P R A P | HLA-Cw*03 28-50 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P | HLA-Cw*03 30-43 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R G E P | HLA-Cw*03 30-47 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P | HLA-Cw*03 29-43 | Lippolis et al. 2002 | |
| T Q F V R F D S D A A S P R | HLA-Cw*03 31-44 | Lippolis et al. 2002 | |
| D D T Q F V R F D S D A A S P R G E | HLA-Cw*03 29-46 | Lippolis et al. 2002 | |
| F V R F D S D A A S P R | HLA-Cw*03 33-44 | Lippolis et al. 2002 | |
| D T Q F V R F D S D A A S P R G E | HLA-Cw*03 30-46 | Lippolis et al. 2002 | |
| Y V D D T Q F V R F D S D A A S P R | HLA-Cw*03 27-44 | Lippolis et al. 2002 | |
| V R F D S D A A S P R | HLA-Cw*03 34-44 | Lippolis et al. 2002 | |
| F V R F D S D A A S P | HLA-Cw*03 33-43 | Lippolis et al. 2002 | |
| Q F V R F D S D A A S P R | HLA-Cw*03 32-44 | Lippolis et al. 2002 | |
| D L R S W T A A D T A A Q I T Q | HLA-Cw*03 129-144 | Lippolis et al. 2002 | |
| D L R S W T A A D T A A Q I T Q R | HLA-Cw*03 129-145 | Lippolis et al. 2002 | |
| N E D L R S W T A A D T A A Q I T Q | HLA-Cw*03 127-144 | Lippolis et al. 2002 | |
| E D L R S W T A A D T A A Q I T Q R | HLA-Cw*03 128-145 | Lippolis et al. 2002 | |
| L N E D L R S W T A A D T A A Q I T Q R | HLA-Cw*03 126-145 | Lippolis et al. 2002 | |
| L R S W T A A D T A A Q I T Q R K W E A A | HLA-Cw*0303 130-150 | Chicz et al. 1993 | |
| V D D T Q F V Q F D S D A A S P R G E P R | HLA-Cw*0501 28-48 | Muntasell et al. 2002 | |
| F V Q F D S D A A S P R G E P | HLA-Cw*0501 33-47 | Dengjel et al. 2005/2 | |
| Y V D D T Q F V Q F D S D A A S P R G E P R A P | HLA-Cw*0501 27-47 | Dengjel et al. 2005/2 | |
| D Y I A L N E D L R S W T | HLA-Cw*0501 122-144 | Dengjel et al. 2005/2 | |
| D G K D Y I A L N E D L R S W T A A | HLA-Cw*0501 119-146 | Dengjel et al. 2005/2 | |
| G R L L R G Y N Q F A Y D G K | HLA-Cw*0501 107-121 | Dengjel et al. 2005/2 | |
| F G P T F V S A V D G L S F Q | HLA-DMA (HLA-DMA34 allele) 145-159 | Dengjel et al. 2005/2 | |
| N R E E F V R F D S D V G E F R | HLA-DPß (allele DPB14) 24-39 | Dengjel et al. 2005/2 | |
| D V E V Y R A V T P L G P P D | HLA-DQB1*0301 43-57 | Dengjel et al. 2005/2 | |
| S P E D F V Y Q F K G M C Y F | HLA-DQ beta 248-265 | Chicz et al. 1993 | |
| A Q G A L A N I A V D K A N L E I | HLA-DR alpha 81-97 | Dengjel et al. 2005/2 | |
| I Q A E F Y L N P D Q S G E F | HLA-DR alpha 33-47 | Dengjel et al. 2005/2 | |
| A P S P L P E T T E N V V C A L G | HLA-DR alpha chain 182-198 | Chicz et al. 1993 | |
| H Q E E Y V R F D S D V G E Y R | HLA-DRB1*04 33-48 | Muntasell et al. 2002 | |
| F Q T L V M L E T V P R S | HLA-DRB1*04 155-167 | Muntasell et al. 2004 | |
| V Y P E V T V Y P A K T | HLA-DRB1*0401 95-106 | Kirschmann et al. 1995 | |
| V Y P E V T V Y P A K | HLA-DRB1*0401 95-105 | Kirschmann et al. 1995 | |
| I Y F R N Q K G H S G L Q P T G F L | HLA-DRB1*0411 219-236 | Friede et al. 1996 | |
| Y V R F D S D V G E Y | HLA-DRB1*0411 37-47 | Dengjel et al. 2005/2 | |
| H Q E E Y V R F D S D V G E Y R A V | HLA-DRB1*0411 33-50 | Dengjel et al. 2005/2 | |
| G A G L F I Y F R N Q K G H S | HLA-DRB1*0411 243-257 | Dengjel et al. 2005/2 | |
| N E D L R S W T A V D T A A Q I S E Q | HLA-E 127-145 | Lippolis et al. 2002 | |
| D L R S W T A V D T A A Q I S E Q | HLA-E 129-145 | Lippolis et al. 2002 | |
| D L R S W T A V D T A A Q I S E Q K | HLA-E 129-146 | Lippolis et al. 2002 | |
| D L R S W T A V D T A A Q | HLA-E 129-141 | Lippolis et al. 2002 | |
| L R S W T A V D T A A Q I S E | HLA-E 130-144 | Lippolis et al. 2002 | |
| E D L R S W T A V D T A A Q I S E Q K | HLA-E 128-146 | Lippolis et al. 2002 | |
| D L R S W T A V D T A A Q I S E | HLA-E 129-144 | Lippolis et al. 2002 | |
| E D L R S W T A V D T A A Q I S E Q | HLA-E 128-145 | Lippolis et al. 2002 | |
| D L R S W T A V D T A A Q I S | HLA-E 129-143 | Lippolis et al. 2002 | |
| N E D L R S W T A V D T A A Q I S E Q K | HLA-E 127-146 | Lippolis et al. 2002 | |
| E D L R S W T A V D T A A Q I S E | HLA-E 128-144 | Lippolis et al. 2002 | |
| G I L N V S A V D K S T G K | HSC71 (71 kDa heat shock cognate protein) 484-497 | Lippolis et al. 2002 | |
| G I L N V S A V D K S T G K E | HSC71 (71 kDa heat shock cognate protein) 484-498 | Lippolis et al. 2002 | |
| E G E R A M T K D N N L L G K F E L | HSC71 (71 kDa heat shock cognate protein) 444-461 | Dengjel et al. 2005/2 | |
| A N G I L N V S A V D K S T G K E | HSC71 (71 kDa heat shock cognate protein) 482-498 | Lippolis et al. 2002 | |
| L N V L R I I N E P T A A A I A Y G | HSP70 167-184 | Muntasell et al. 2004 | |
| N V L R I I N E P T A A A I A Y G | HSP70 168-184 | Muntasell et al. 2004 | |
| L L Q K L I L W R V L | Hypothetical protein DKFZp434O032 90-100 | Dengjel et al. 2005/2 | |
| G P P I G S F T L I D S E V S Q L | Hypothetical Protein FLJ16275 87-104 | Dengjel et al. 2005/2 | |
| K N T L Y L Q M N S L R A E D T A | Ig heavy chain 100-116 | Muntasell et al. 2002 | |
| G V Y F Y L Q W G R S T L V S V S | Ig heavy chain 121-137 | Chicz et al. 1993 | |
| Y L Q M N S L K T E D T | Ig heavy chain V region 83-94 | Dengjel et al. 2005/2 | |
| K N T L Y L Q M N S L K T E D T A | Ig heavy chain V region 79-95 | Dengjel et al. 2005/2 | |
| E K H K V Y A C E V T H Q G L S S P V | Ig kappa chain 79-97 | Muntasell et al. 2002 | |
| E K H K V Y A C E V T H Q G L S S P | Ig kappa chain 79-96 | Muntasell et al. 2002 | |
| K H K V Y A C E V T H Q G L S S P V | Ig kappa chain 80-97 | Muntasell et al. 2002 | |
| E K H K V Y A C E V T H Q G L S | Ig kappa chain 79-94 | Muntasell et al. 2002 | |
| H K V Y A C E V T H Q G L S S P V | Ig kappa chain 81-97 | Muntasell et al. 2002 | |
| K H K V Y A C E V T H Q G L S | Ig kappa chain 80-94 | Muntasell et al. 2002 | |
| H K V Y A C E V T H Q G L S | Ig kappa chain 81-94 | Muntasell et al. 2002 | |
| K V Q W K V D N A L Q S G N S | Ig kappa chain 37-51 | Lippolis et al. 2002 | |
| K V Q W K V D N A L Q S G N | Ig kappa chain 37-50 | Lippolis et al. 2002 | |
| Y P R E A K V Q W K V D N A L Q S G N | Ig kappa chain 32-50 | Lippolis et al. 2002 | |
| A K V Q W K V D N A L Q S G N | Ig kappa chain 36-50 | Lippolis et al. 2002 | |
| Y P R E A K V Q W K V D N A L Q S G N S | Ig kappa chain 32-51 | Lippolis et al. 2002 | |
| K V Q W K V D N A L Q S G N S Q | Ig kappa chain 37-52 | Lippolis et al. 2002 | |
| P R E A K V Q W K V D N A L Q S G N | Ig kappa chain 33-50 | Lippolis et al. 2002 | |
| A K V Q W K V D N A L Q S G N S | Ig kappa chain 36-51 | Lippolis et al. 2002 | |
| K V Q W K V D N A L Q S G N S Q E | Ig kappa chain 37-53 | Lippolis et al. 2002 | |
| E A K V Q W K V D N A L Q S G N | Ig kappa chain 35-50 | Lippolis et al. 2002 | |
| Y P R E A K V Q W K V D N A L Q S G N S Q | Ig kappa chain 32-52 | Lippolis et al. 2002 | |
| E A K V Q W K V D N A L Q S G N S | Ig kappa chain 35-51 | Lippolis et al. 2002 | |
| E A K V Q W K V D N A L Q S G N S Q | Ig kappa chain 35-52 | Lippolis et al. 2002 | |
| A K V Q W K V D N A L Q S G N S Q E | Ig kappa chain 36-53 | Lippolis et al. 2002 | |
| K V Q W K V D N A L Q S G N S Q E S | Ig kappa chain 37-54 | Lippolis et al. 2002 | |
| A K V Q W K V D N A L Q S G N S Q E S | Ig kappa chain 36-54 | Lippolis et al. 2002 | |
| A K V Q W K V D N A L Q S G N S Q | Ig kappa chain 36-52 | Lippolis et al. 2002 | |
| K V Q W K V D N A L Q S G | Ig kappa chain 37-49 | Lippolis et al. 2002 | |
| K H K V Y A C E V T H Q G | Ig kappa chain C region 80-92 | Friede et al. 1996 | |
| H K V Y A C E V T H Q G L | Ig kappa chain C region 81-93 | Friede et al. 1996 | |
| P G Q P P R L L I Y D A S N R A T G I P A | Ig kappa light chain variable region 40-60 | Kirschmann et al. 1995 | |
| K P G Q P P R L L I Y D A S N R A T G I P A | Ig kappa light chain variable region 39-60 | Kirschmann et al. 1995 | |
| X E P P R L L I Y D A S N R A T G I P A | Ig kappa light chain variable region 41-60 | Kirschmann et al. 1995 | |
| X E P P R L L I Y D A S N R A T G | Ig kappa light chain variable region 41-57 | Kirschmann et al. 1995 | |
| T P E Q W K S H K S Y S C Q V T H E G S T V E K T | Ig lambda light chain C3 region 73-97 | Dengjel et al. 2005/2 | |
| E S G P T T Y K V T S T L T I K E S D W L | IgM heavy chain 169-191 | Dengjel et al. 2005/2 | |
| K I D L P E Y Q G E P D E I S I Q K | Inosine triphosphate pyrophosphatase 39-56 | Muntasell et al. 2004 | |
| I D L P E Y Q G E P D E I S I Q K | Inosine triphosphate pyrophosphatase 40-56 | Muntasell et al. 2004 | |
| Y P S H S F I G E E S V A A G E K | Inositol monophosphatase 62-78 | Dengjel et al. 2005/2 | |
| L I T F L C D R D A G V G F P E | Insulin-like growth factor 2 receptor 686-701 | Dengjel et al. 2005/2 | |
| E A R G A R R G V K K V M V I | Integrin alpha-1 (rat) 236-250 | Muntasell et al. 2004 | |
| I D I S F L L D V S S L S R A E E | Integrin alpha-4 691-707 | Dengjel et al. 2005/2 | |
| L F F F L V E D D A R G T V | Integrin beta-7 678-691 | Dengjel et al. 2005/2 | |
| V P D H V V W S L F N T L | Interferon inducible protein 33-45 | Dengjel et al. 2005/2 | |
| L G F I A F A Y S V K S D R | Interferon inducible protein 52-65 | Dengjel et al. 2005/2 | |
| D R K M V G D V T G A Q A Y A | Interferon inducible protein 65-79 | Dengjel et al. 2005/2 | |
| I E V W V E A E N A L G K V T | Interleukin 6 receptor subunit beta 172-186 | Dengjel et al. 2005/2 | |
| L A N F L V R S S N N L G P V L | Islet amyloid polypeptide (rat) 26-41 | Muntasell et al. 2004 | |
| R G Y M E I E Q S V K S F K | Keratinocyte associated transmembrane protein 2 124-137 | Dengjel et al. 2005/2 | |
| V T R A F V A A R T F A Q G L A | K-glypican (mouse) 193-208 | Muntasell et al. 2004 | |
| I R F V V D S G K V K E M | KIAA0134 367-379 | Dengjel et al. 2005/2 | |
| F S Q F L G D P V E K A A Q | KIAA0494 411-424 | Dengjel et al. 2005/2 | |
| V P G F A D D P T E L A C R V | KIAA1436 392-406 | Dengjel et al. 2005/2 | |
| G S S Y G S E T S I P A A A H | KIAA1691 485-499 | Dengjel et al. 2005/2 | |
| A A D H R Q L Q L S I S S C L Q Q L | LAGE-1 139-156 | Jäger et al. 2000 | |
| G V P K D Y T G E D V T P Q N | Legumain 81-95 | Dengjel et al. 2005/2 | |
| D V R K L Y W L M K S S L N G D N | Leucyl / Cystinyl aminopeptidase variant 512-528 | Dengjel et al. 2005/2 | |
| M E L P D Y V L L T A T | Liprin-beta-1 886-897 | Dengjel et al. 2005/2 | |
| L K P T I C S D Q D N Y C V T | Ly-6 related protein 16-30 | Dengjel et al. 2005/2 | |
| L K P T I C S D Q D N Y C V T | Ly-6 related protein 16-30 (cyst-C 21) | Dengjel et al. 2005/2 | |
| R D M F T L E D T L | Lymphocyte differentiation antigen CD38 140-149 | Dengjel et al. 2005/2 | |
| R D M F T L E D T L L G | Lymphocyte differentiation antigen CD38 140-151 | Dengjel et al. 2005/2 | |
| V Q R D M F T L E D T L L G Y L A D | Lymphocyte differentiation antigen CD38 138-155 | Dengjel et al. 2005/2 | |
| V D Y F L N V A T A Q G R Y Y | Lysosomal alpha-mannosidase 244-258 | Dengjel et al. 2005/2 | |
| H P P E L L F S A S L P A L G F S T | Lysosomal alpha-mannosidase 511-528 | Dengjel et al. 2005/2 | |
| L P S Y E E A L S L P S K T P E | Lysosomal associated multitransmembrane protein (LAMP) 236-251 | Lippolis et al. 2002 | |
| L P S Y E E A L S L P S K T P E G | Lysosomal associated multitransmembrane protein (LAMP) 236-252 | Lippolis et al. 2002 | |
| L P S Y E E A L S L P S K T P | Lysosomal associated multitransmembrane protein (LAMP) 236-250 | Lippolis et al. 2002 | |
| V V L P S Y E E A L S L P S K T P E | Lysosomal associated multitransmembrane protein (LAMP) 234-251 | Lippolis et al. 2002 | |
| V V L P S Y E E A L S L P S K T P E G | Lysosomal associated multitransmembrane protein (LAMP) 234-252 | Lippolis et al. 2002 | |
| V L P S Y E E A L S L P S K T P E G | Lysosomal associated multitransmembrane protein (LAMP) 235-252 | Lippolis et al. 2002 | |
| G Y L R I A D L I S S F | Lysosomal associated multitransmembrane protein (LAMP) 56-67 | Dengjel et al. 2005/2 | |
| S E Q H D I A I D L S P L A Q H E E G | Mannose-6-phosphate receptor (rat) 323-341 | Muntasell et al. 2004 | |
| I V T P R T P P P S Q G | MBP 227-238 | Fissolo et al. 2009 | |
| P E N P V V H F F K N | MBP 216-226 | Fissolo et al. 2009 | |
| V D D T Q F V R F D S D A A S P R | MHC class I HLA-C heavy chain 22-37 | Fissolo et al. 2009 | |
| E R E G P E Y W E E Q T L V A K | MHC class I non-RT1.A alpha-1-chain (rat) 53-68 | Muntasell et al. 2004 | |
| T P I S E V Y E S E K D E D G F L Y | Microtubule-associated proteins 1A/1B light chain 3 92-109 | Dengjel et al. 2005/2 | |
| V P D G F L S E L T Q Q L A Q A | MIF 14-28 | Dengjel et al. 2005/2 | |
| S P D R V Y I N Y Y D M N A A N | MIF 90-105 | Dengjel et al. 2005/2 | |
| D G L K S Q A A F E E M R T N Y I K E | Mineralocorticoid receptor 884-902 | Muntasell et al. 2004 | |
| I P I I I H P I D R S V D | Mitochondrial protein 18 kDa 134-146 | Dengjel et al. 2005/2 | |
| A P V L F F D R N P I G R I L | Multidrug resistance-associated protein 4 809-822 | Dengjel et al. 2005/2 | |
| A K Y A H R Y F A T V G G S A S D T | Myosin 5b (rat) 173-190 | Muntasell et al. 2002 | |
| I G A G G T G A A L Y V M R L A L | NADH dehydrogenase 1 alpha subcomplex 4 22-38 | Muntasell et al. 2004 | |
| I V V Y T G D R T V M G R I A T | Na+-K+-ATPase 252-267 | Dengjel et al. 2005/2 | |
| G P T P S Q S R F Q V D P V S E N A G | Na-K-Cl cotransporter (rat) 69-87 | Muntasell et al. 2004 | |
| A E Y E V Y V V A E N Q Q G K S K A | N-CAM (rat) 661-678 | Muntasell et al. 2002 | |
| N A E Y E V Y V V A E N Q Q G K S K A | N-CAM (rat) 660-678 | Muntasell et al. 2002 | |
| L E T L H E A L | n-chimaerin (rat) 251-258 | Muntasell et al. 2004 | |
| G F P K P P S Y N V A T T L P S Y D E A | Nedd4 family interacting protein 1 60-79 | Muntasell et al. 2004 | |
| E S G F P K P P S Y N V A T T L P S Y D E | Nedd4 family interacting protein 1 58-78 | Muntasell et al. 2004 | |
| G F P K P P S Y N V A T T L P S Y D E | Nedd4 family interacting protein 1 60-78 | Muntasell et al. 2004 | |
| F P K P P S Y N V A T T L P S Y D E A | Nedd4 family interacting protein 1 61-79 | Muntasell et al. 2004 | |
| F P K P P S Y N V A T T L P S Y D E | Nedd4 family interacting protein 1 61-78 | Muntasell et al. 2004 | |
| F P K P P S Y N V A T T L P S Y D | Nedd4 family interacting protein 1 61-77 | Muntasell et al. 2004 | |
| K P P S Y N V A T T L P S Y D E | Nedd4 family interacting protein 1 63-78 | Muntasell et al. 2004 | |
| D G R T F Y I D H N S K I T Q | NEDD4La 561-575 | Dengjel et al. 2005/2 | |
| V P I D V D K T K V H N V E P V E S A R I E P P D T G L | NEFA precursor (rat) 1-28 | Muntasell et al. 2004 | |
| T S W T A E K S I A Q L N S K | Neprilysin (rat) 179-193 | Muntasell et al. 2002 | |
| G T Y R P E Y A V N S I K | Neprilysin (rat) 695-707 | Muntasell et al. 2004 | |
| G T Y R P E Y A V N S I K T D | Neprilysin (rat) 695-709 | Muntasell et al. 2004 | |
| D Y Y K G E E S N S S A N K | N-ethylmaleimide-sensitive factor attachment protein (NSFA) 150-163 | Lippolis et al. 2002 | |
| S A D Y Y K G E E S N S S A N K | N-ethylmaleimide-sensitive factor attachment protein (NSFA) 148-163 | Lippolis et al. 2002 | |
| A D Y Y K G E E S N S S A N K | N-ethylmaleimide-sensitive factor attachment protein (NSFA) 149-163 | Lippolis et al. 2002 | |
| D Y Y K G E E S N S S A N | N-ethylmaleimide-sensitive factor attachment protein (NSFA) 150-162 | Lippolis et al. 2002 | |
| T G K T P G A E I D F K Y A L I G T A V G V A | Novel Protein 24-46 | Dengjel et al. 2005/2 | |
| D K E F M G N Q D N N S L K | O-acetyl GD3 ganglioside synthase (rat) 199-212 | Muntasell et al. 2002 | |
| D E S G T G D E K F M G N Q D N N S L K | O-acetyl GD3 ganglioside synthase (rat) 193-212 | Muntasell et al. 2004 | |
| G R P T L L P E E I D D A F P L | p53 (rat) 295-310 | Muntasell et al. 2004 | |
| A A P Y E K E V P L S A L T N I L S A Q L | PAI-1 238-258 | Chicz et al. 1993 | |
| S P D D K Y I Y V A D I L A H E I H | Paraoxonase 2 228-245 | Dengjel et al. 2005/2 | |
| V S F E L F A D K V P K T A E N | Peptidyl-prolyl cis-trans isomerase A (Cyclophilin A) 21-36 | Dengjel et al. 2005/2 | |
| R V V M R V D F N V P M K N | Phosphoglycerate kinase (PGK1) 17-30 | Dengjel et al. 2005/2 | |
| G P V G V F E W E A F A R G T | Phosphoglycerate kinase (PGK1) 337-351 | Dengjel et al. 2005/2 | |
| G H L Y R E D Q T S P A P G | Phosphoinositide-3-kinase 9-22 | Fissolo et al. 2009 | |
| T H P E F R I E D S E P H I P L | Plasma membrane Ca2+ pumping ATPase 1184-1199 | Muntasell et al. 2004 | |
| L D F L K A V D T N R A S | Plexin domain-containing 2 39-51 | Fissolo et al. 2009 | |
| Y V G D L H P D V T E A M L | Poly(A)-binding protein (mouse) 14-27 | Muntasell et al. 2004 | |
| W G A L A T I S T L E A V R | Protein CREG 37-50 | Dengjel et al. 2005/2 | |
| E G P E Y W E E Q T Q R A K G | Protein involved in peptide presentation (rat) 54-68 | Muntasell et al. 2002 | |
| R E G P E Y W E E Q T Q R A K G | Protein involved in peptide presentation (rat) 53-68 | Muntasell et al. 2002 | |
| E G P E Y W E E Q T Q R A K G H | Protein involved in peptide presentation (rat) 54-69 | Muntasell et al. 2002 | |
| R E G P E Y W E E Q T Q R A K G H E | Protein involved in peptide presentation (rat) 53-70 | Muntasell et al. 2002 | |
| E G P E Y W E E Q T Q R A K G H E | Protein involved in peptide presentation (rat) 54-70 | Muntasell et al. 2004 | |
| Y V D D T E F V R Y D S D A E N P R | Protein involved in peptide presentation (rat) 27-44 | Muntasell et al. 2004 | |
| D L L S G K K N T V E G L P P L G G M K | Protein tyrosine phosphatase 2E (rat) 822-841 | Muntasell et al. 2004 | |
| R A G P A G E L L S Q G N P T G S S P A | Protein tyrosine phosphatase-like protein (rat) 99118 | Muntasell et al. 2004 | |
| V A F P E N N K P G E V V A E | Protocadherin 1 (mouse) 418-432 | Muntasell et al. 2004 | |
| A Q P E Y T V F V K E N N P P G A H I | Protocadherin alpha 4 (rat) 427-445 | Muntasell et al. 2004 | |
| Q T S Y T M F V R E N N S P A L H I G | Protocadherin beta 15 (mouse) 453-471 | Muntasell et al. 2004 | |
| S Y T M F V R E N N S P A L H | Protocadherin beta 15 (mouse) 455-469 | Muntasell et al. 2004 | |
| V H N Y F A I D P T T G A I H T | Protocadherin (rat) 1817-1832 | Muntasell et al. 2002 | |
| E P S V H N Y F A I D P T T G A I H | Protocadherin (rat) 1814-1831 | Muntasell et al. 2002 | |
| I V E P S V H N Y F A I D P T T G A I H T | Protocadherin (rat) 1812-1832 | Muntasell et al. 2002 | |
| V I D E H T P L Y S A D P N A I D T D Y | Protocadherin (rat) 4406-4425 | Muntasell et al. 2004 | |
| I D L P E Y Q G E P D E I S I Q K | Putative oncogene protein hlc14-06-p 40-56 | Muntasell et al. 2002 | |
| K I D L P E Y Q G E P D E I S I Q K | Putative oncogene protein hlc14-06-p 39-56 | Muntasell et al. 2002 | |
| L G H L K I M H D A I G F R | Putative transmembrane protein (CLN5) 159-172 | Dengjel et al. 2005/2 | |
| R L A P I T S D P T E A A A V G | Pyruvate kinase M1 and M2 subunit (rat) 399-414 | Muntasell et al. 2002 | |
| R L A P I T S D P T E A A A V G A | Pyruvate kinase M1 and M2 subunit (rat) 399-415 | Muntasell et al. 2002 | |
| G A L L V Y D I T S R E T Y N | ras-related protein Rab-4A 83-97 | Dengjel et al. 2005/2 | |
| N A F F T L A R D I K A K M D | ras-related protein Rab-8A 160-174 | Dengjel et al. 2005/2 | |
| T E Q F T A M R D L Y M K N | ras-related protein Rap-1A 61-74 | Dengjel et al. 2005/2 | |
| N K A F S M D E P A S A K R P | Retinoic acid inducible protein 3 (mouse) 317-331 | Muntasell et al. 2004 | |
| S L E L Y R E L D L N S V L L | Ribonuclease 6 114-128 | Dengjel et al. 2005/2 | |
| T G Q E V V F V A E P D N K N V Y K | Ribophorin II (rat) 419-436 | Muntasell et al. 2002 | |
| A I I D P G D S D I I R S M P E Q T G E K | Ribosomal protein L30 (rat) 94-115 | Muntasell et al. 2004 | |
| I I D P G D S D I I R S M P E Q T G E K | Ribosomal protein L30 (rat) 95-115 | Muntasell et al. 2004 | |
| I P S V F I G E S S A N S L K D | Ring finger protein 13 145-160 | Dengjel et al. 2005/2 | |
| S S R T F H R A A S S A A Q G A F | SCAMP2 310-326 | Dengjel et al. 2005/2 | |
| Y G S Y S T Q A S A A A A T A E | SCAMP3 83-98 | Dengjel et al. 2005/2 | |
| M L H I W G K Y T R S | SEC61 beta subunit 85-95 | Muntasell et al. 2002 | |
| I S I Y S S E R S V L Q | Semaphorin-7A 475-486 | Dengjel et al. 2005/2 | |
| G I L I V W D P S V Y H S D I P | Sialyltransferase 252-267 | Dengjel et al. 2005/2 | |
| L I P S Y I R D S T V A V V V | small GTPase RAB6B 78-92 | Dengjel et al. 2005/2 | |
| F P E P I K L D K N D R A K A S A | Small GTP binding protein RAB7 186-202 | Dengjel et al. 2005/2 | |
| V A A V F I A Q L S Q Q S L D F V K | Sodium dependent neutral amino acid transporter 396-413 | Dengjel et al. 2005/2 | |
| G I V V Y T G D R T V M G R | Sodium potassium ATPase alpha subunit (rat) 251-264 | Muntasell et al. 2002 | |
| G I V V Y T G D R T V M G R I | Sodium potassium ATPase alpha subunit (rat) 251-265 | Muntasell et al. 2002 | |
| I V V Y T G D R T V M G R I A | Sodium potassium ATPase alpha subunit (rat) 252-266 | Muntasell et al. 2002 | |
| G I V V Y T G D R T V M G R I A | Sodium potassium ATPase alpha subunit (rat) 251-266 | Muntasell et al. 2002 | |
| G I V V Y T G D R T V M G T I A | Sodium potassium ATPase alpha subunit (rat) 251-266, (ox-M 262) | Muntasell et al. 2002 | |
| T G A L Y R I G D L Q A F Q G H G | Solute carrier family 3, member 2 120-136 | Dengjel et al. 2005/2 | |
| R H P I N E Y Y I A D A S E D Q V F | Sortilin-related receptor 262-279 | Dengjel et al. 2005/2 | |
| K P G I Y R S N M D G S A A Y | Sortilin-related receptor 817-832 | Dengjel et al. 2005/2 | |
| G P S Y W C Q N T E T A A Q | Sphingolipid activator protein 2 482-495 | Dengjel et al. 2005/2 | |
| T G N Y R I E S V L S S | Sphingolipid activator protein 3 (SAP-3) 134-145 | Friede et al. 1996 | |
| S L Q E Y L A E Q N Q R Q L E | Sulfated glycoprotein 1 (rat) 124-138 | Muntasell et al. 2002 | |
| S L Q E Y L A E Q N Q R Q L E S | Sulfated glycoprotein 1 (rat) 124-139 | Muntasell et al. 2002 | |
| S L Q E Y L A E Q N Q R Q L E S N | Sulfated glycoprotein 1 (rat) 124-140 | Muntasell et al. 2004 | |
| Q S L Q E Y L A E Q N Q R Q L E | Sulfated glycoprotein 1 (rat) 123-138 | Muntasell et al. 2004 | |
| N P K D V L V G A D S V R A A I T F | synaptogyrin 2 134-151 | Dengjel et al. 2005/2 | |
| N P R K F N L D A T E L S I R K A | Syntaxin 6 74-91 | Dengjel et al. 2005/2 | |
| M K I F V G N V D G A D T T P E E L | SYT interacting protein SIP 1-18 | Muntasell et al. 2004 | |
| A L N S V A Y E R S A M Q N Y E | Tachykinin gamma (rat) 92-107 | Muntasell et al. 2002 | |
| H K G E I R G A S T P F Q F R | Tax1-binding protein 1 107-121 | Dengjel et al. 2005/2 | |
| L E A L D I M A D M L S R Q G G | TBP-interacting protein TIP120A 151-167 | Dengjel et al. 2005/2 | |
| E I I H K A L I D R N I Q | TNF alpha inducible protein A20 62-74 | Dengjel et al. 2005/2 | |
| G P L S W Y S D P G L A G V S | TNF ligand superfamily member 9 105-119 | Dengjel et al. 2005/2 | |
| L V A F R I V H D L I S R D Y S | Transcriptional coactivator MMS19 191-206 | Dengjel et al. 2005/2 | |
| T G T A V S T L S Y I S R T N Q L A A G F S D G Y L A L | Transcription factor ELYS 228-255 | Muntasell et al. 2004 | |
| D V A F V K D Q T V I Q N T D | Transferrin (cattle) 536-550 | Friede et al. 1996 | |
| K G D V A F V K D Q T V I Q N T D G | Transferrin (cattle) 66-83 | Muntasell et al. 2004 | |
| H P V T G Q F L Y Q D S N W A S K V E | Transferrin receptor 515-533 | Muntasell et al. 2002 | |
| Y V A Y S K A A T V T G K L | Transferrin receptor 119-232 | Dengjel et al. 2005/2 | |
| C P S D W K T D S T C R M V T S E | Transferrin receptor 353-369 | Dengjel et al. 2005/2 | |
| F T Y I N L D K A V L G T S N | Transferrin receptor 479-493 | Dengjel et al. 2005/2 | |
| N S Q L L S F V R D L N Q Y R A D I | Transferrin receptor 615-632 | Dengjel et al. 2005/2 | |
| Q L I Y I P L P D E K S R V A | Translational endoplasmatic reticulum ATPase 640-654 | Dengjel et al. 2005/2 | |
| L K P E F V D I I N A K Q | Triosephosphate isomerase 236-248 | Dengjel et al. 2005/2 | |
| N P D T L S A M S N P R A M Q | Ubiquilin-1 447-461 | Dengjel et al. 2005/2 | |
| S D Y N I Q K E S T L H L V L R | Ubiquitin 57-72 | Dengjel et al. 2005/2 | |
| N P P Y D K G A F R I E I N F P A E Y P F K P P | Ubiquitin conjugating enzyme E2L3 (UbcH7) 43-66 | Dengjel et al. 2005/2 | |
| K P L P K E M E E F V Q T S | UDPGT (rat) 264-277 | Muntasell et al. 2004 | |
| D P D P E D F A D E Q S L V G R F I | Vacuolar protein sorting 35 478-495 | Dengjel et al. 2005/2 | |
| L Q P F D Y D P N E K S K | VAMP associated protein A (rat) 80-92 | Muntasell et al. 2002 | |
| L Q P F D Y D P N E K S K H K | VAMP associated protein A (rat) 80-94 | Muntasell et al. 2004 | |
| G S L F V Y N I T T N K Y K A F L D K Q | VLA-4 190-209 | Chicz et al. 1993 | |
| A A K Y Q L D P T A S I S A | Voltage-dependent anion-selective channel protein 2 248-261 | Dengjel et al. 2005/2 | |
| A P S G F Y I A S G D V S G K L R | WD-repeat protein 1 66-82 | Dengjel et al. 2005/2 | |
| L L Q Q I S Q H Q E H F | XP-C repair complementing protein 313-324 | Dengjel et al. 2005/2 | |
| E V S L K R P L G N S P G E R | Zinc finger protein 3 133-147 | Muntasell et al. 2002 | |
| T-cell epitope |
| M K L G T W T Y D G S V V | ACh receptor alpha 169-181 | Ong et al. 1991 | |
| A T G F K Q S S K A L Q R P V A S | BCR/ABL fusion peptide n.a. | ten Bosch et al. 1996 | Cancer related |
| E D L T V K I G D F G L A T E K S R W S G | B-RAF Protooncogene (V600E) 586-614 | Sharkey et al. 2004 | Cancer related |
| R S F T L A S S E T G V | Cartilage glycoprotein 39 242-253 | Verheijden et al. 1997 | |
| F S K I A S N T Q | Cartilage glycoprotein 39 85-93 | Cope et al. 1999 | |
| Y D D Q E S V K S | Cartilage glycoprotein 39 307-315 | Cope et al. 1999 | |
| F S W A M D L D P K G A | CDC27 760-771 | Wang et al. 1999 | Cancer related |
| Y A C F V S N L A T G R N N S | CEA 653-667 | Kobayashi et al. 2002 | Cancer related |
| Y S W R I N G I P Q Q H T Q V | CEA 625-639 | Ruiz et al. 2004 | Cancer related |
| L L E S I Q Q N L L K A E K G N | Chamydial histone-like protein hc-1 12-27 | Gaston et al. 1996 | |
| Q N L L K A E K G N K A A A Q R | Chamydial histone-like protein hc-1 18-33 | Gaston et al. 1996 | |
| T L Y Q D D T L T L Q A A G | COA-1 447-460 | Maccalli et al. 2003 | |
| A G F K G E Q G P K G E P | Collagen alpha 1 (II) 280-292 | Fugger et al. 1996 | |
| N P P S M V A A G S V V A A V | Cyclin D1 198-212 | Dengjel et al. 2004 | |
| P Y Y V V D L S V R G M | EBV BHRF1 122-133 | Landais et al. 2004 | |
| F E Y H Q E G G P D G E P | EBV EBNA-1 415-427 | Demachi-Okamura et al. 2008 | |
| A E G L R A L L A R S H V E R | EBV EBNA-1 482-496 | Krüger et al. 2003 | |
| G Q T Y H L I V D T D S L G N P S L S V | EBV EBNA-2 11-30 | Long et al. 2004 | |
| A E G L R A L L A R S H V E R | EBV Nuclear Antigen Typ I 482-496 | Krüger et al. 2003 | |
| M N I L L Q Y V V K S F D | GAD65 115-127 | Wicker et al. 1996 | |
| I A F T S E H S H F S L K | GAD65 274-286 | Wicker et al. 1996 | |
| L P R L I A F T S E H S H F | GAD65 270-283 | Endl et al. 1997 | |
| F F R M V I S N P A A T H Q D I D F L I | GAD65 556-575 | Endl et al. 1997 | |
| W N R Q L Y P E W T E A Q R L D | gp100 220-233 | Li et al. 1998 | |
| I Y R R R L M K Q D F S V P Q L P H S | gp100 594-612 | Kierstead et al. 2001 | Cancer related |
| K P G K I S H I M L D V A F T S H | HCMV pp65 283-299 | Kern et al. 2002, Li Pira et al. 2004 | |
| T S Q Y R I Q G K L E Y R H T | HCMV pp65 370-384 | Li Pira et al. 2004 | |
| G Y K V L V L N P S V A A T | HCV-1 NS3 28-41 | Diepolder et al. 1997 | |
| K V P I K W M A L E S I L R R R F | HER-2/neu 861-877 | Kobayashi et al. 2000 | |
| F R K Q N P D I V I Y Q Y M D D L Y V G | HIV-1 (HXB2) RT 326-345 | van der Burg et al. 1999 | |
| Y V I E G T S K Q | HLFA-1 alpha 307-315 | Gross et al. 1998 | |
| L F M D T L S F V C P L C | HPV59 E7 91-103 | Hohn et al. 1999 | Cancer related |
| E F V V E F D L P G I K A | HSP18 (M. leprae) 38-50 | McNicholl et al. 1995 | |
| G R H V V I D K S F G S P Q V T | HSP60 (Chlamydia) 34-49 | Deane et al. 1997 | |
| K H K V Y A C E V T H Q G L S S | Ig kappa chain 80-95 | Kovats et al. 1997 | |
| K V Q W K V D N A L Q S G N S | Ig kappa chain 37-51 | Kovats et al. 1997 | |
| P K Y V K Q N T L K L A T G M R N V P | Influenza A HA 306-324 | Carmichael et al. 1997 | |
| S V S E S D T I R S I S I A S | Kallikrein 4 95-109 | Hural et al. 2002 | Cancer related |
| S H Y F K I I E D L R A Q I | Keratin 18 126-139 | Dengjel et al. 2004 | |
| C K F Y R D P T A F G S G | Link Protein 46-58 | Hammer et al. 1995 | |
| Y R A R E P V T K A E M L G | MAGE-6 124-137 | Tatsumi et al. 2003 | |
| I F S K A S D S L Q L V F G I E | MAGE-6 150-165 | Tatsumi et al. 2003 | |
| L T Q Y F V Q E N Y L E Y R Q V P G | MAGE-6 246-263 | Tatsumi et al. 2003 | |
| E S E F Q A A L S R K V A K L | MAGE-6 102-116 | Tatsumi et al. 2003 | |
| L L K Y R A R E P V T K A E M L G S V V G N W Q | MAGE-6 121-144 | Tatsumi et al. 2003 | |
| F F P V I F S K A S D S L Q L V F G I | MAGE-6 146-164 | Tatsumi et al. 2003 | |
| R K V A E L V H F L L L K Y R | MAGEA3 111-125 | Consogno et al. 2003 | Cancer related |
| G D N Q I I M P K A G L L I I V | MAGEA3 191-205 | Consogno et al. 2003 | Cancer related |
| F F P V I F S K A S S S L Q L | MAGEA3 146-160 | Consogno et al. 2003 | Cancer related |
| R N G Y R A L M D K S L H V G T Q C A L T R R | MART-1 51-73 | Zarour et al. 2000 | |
| L S R F S W G A E G Q R P G F G Y G G | MBP 245-263 | Muraro et al. 1997 | |
| T I R L T A A D H R Q L Q L S | NY-ESO-1 134-148 | Neumann et al. 2004/1 | |
| L L K E F T V S G N I L T I R R | NY-ESO-1 122-136 | Zeng et al. 2000 | |
| G F R L G F L H S G T A K S V | p53 108-122 | Rojas et al. 2005 | Cancer related |
| E Y L N K I Q N S L S T E W S P C S V T | P. falciparum T1 302-321 | Calvo-Calle et al. 1997 | |
| Q P L A L E G S L Q K | Prepro-insulin 54-64 | Congia et al. 1998 | |
| M A L W M R L L P L L A L L A | Proinsulin A 1-15 | Kent et al. 2005 | |
| N Y T L R V D C T P L M Y S L | PSMA E(3.4.17.2) 459-473 | Schroers et al. 2003 | Cancer related |
| C E F H A C W P A F T V L G E | TRAG-3 34-48 | Janjic et al. 2006 | Cancer related |
| Q N I L L S N A P L G P Q F P | Tyrosinase 38-52 | Topalian et al. 1996 | Cancer related |
| D Y S Y L Q D S D P D S F Q D | Tyrosinase 430-444 | Topalian et al. 1996 | Cancer related |
| Y G Q M K N G S T P M F N D I N I Y D L | Tyrosinase 138-157 | Kierstead et al. 2001 | Cancer related |
| A L H I Y M D G T M S Q V Q G S A | Tyrosinase 347-363 | Kierstead et al. 2001 | Cancer related |
| E K R F V P D G N R I S W D S | VEGFR-2 148-163 | Sun et al. 2008 | |
| P Q Q M G S D V R D L N A L L | WT1 66-80 | Knights et al. 2002 | Cancer related |
